Scaffold Ga0187849_1000022

Overview

Basic Information

• Taxon OID: 3300017929
• Scaffold ID: Ga0187849_1000022
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 194644
• Total Scaffold Genes: 176
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 137 (77.84%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010488	Metagenome / Metatranscriptome	303	Y
F015917	Metagenome / Metatranscriptome	251	Y
F032595	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187849_1000022133	F032595	GGA	MPLYFSAHTTACLTKQALRELMKGLLEVTGVNIRRSVASQIGGRMLVEAEAPDQKTLEKFFEDRNINCEWVMRIDLDASAGAVAEL
Ga0187849_1000022169	F015917	GGAG	VTRKRKKVLVGNIEVTPLTAKQHRRLEERIKKRHEKLRKRYREIHGKTVDWISYSFEDGSLYIDIRFKDKTDFSLRFSPQIVTDGIDLSDMSSGNFKLIRE
Ga0187849_1000022171	F010488	AGGAGG	MRIVLKVSSNNEYCNEGCEFALLDLTPELARLAMGRIATLREQKNIDPDIDEVYYWAYFVEYFSPWKDLASSAAEVEGTTVTLQAMLDELSIEEKEIVCVHETFQVSPAQIAAVECEQMIVREGSIAFVAIPKHASFYAQTVELPLAMLEAAATTRVSTTQV