Scaffold Ga0187849_1000016

Overview

Basic Information

• Taxon OID: 3300017929
• Scaffold ID: Ga0187849_1000016
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 213491
• Total Scaffold Genes: 206
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 169 (82.04%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012538	Metagenome	280	Y
F053247	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187849_1000016101	F012538	GAG	VDQPDRQQNISTVRAPSRAVISLNREFRAVLVNEEVAGIGRAVAQIVRGDGWHEANASAVLVASIVAWLGPDAVHPLGFYADGTGPVEAVAKVGNYFFTGHGIDNEDDLTVNCCQRHRARFSQSRFEDLDLTEPNPRFTIGTQLAQRAVDRMAYLLSEEIDSEIARVVLGT
Ga0187849_1000016200	F053247	GGAGG	MIGYWHAISPDRHVQAGVAMGAHLGGHELIVERSCEGCWRWAVMNCLGHEIEGGTAPDERTAEEMAEDAAFHIHPPTVGDWVRRLI