Scaffold Ga0187849_1000001

Overview

Basic Information

• Taxon OID: 3300017929
• Scaffold ID: Ga0187849_1000001
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 576802
• Total Scaffold Genes: 544
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 441 (81.07%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000313	Metagenome / Metatranscriptome	1323	Y
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F004185	Metagenome / Metatranscriptome	449	Y
F005731	Metagenome / Metatranscriptome	391	Y
F006229	Metagenome / Metatranscriptome	378	Y
F019380	Metagenome	230	Y
F030998	Metagenome / Metatranscriptome	183	Y
F037334	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187849_1000001131	F037334	AGGGGG	MASEHQEQQATNHALDTLANWMKAGTHEGISFEVSRLTNDLFTDSFLGGGDASRFTASGHRGTLTSQLSNANILDSNGGVPHQFPIQFAFDLNTGKAAGNWNNPVTAQAEAVTVTLTFFKSATRPEGKYYIFFSDESSDKAGYTFTFLLL
Ga0187849_1000001201	F005731	GGAGG	MASRKLFSTLVITWVAVPSLAIFLRAGPAKAQNMSASYTFLVASGFLCDPGDSATCPAVVKSPNGDTYEMSGAGTFSTQGKSATAAGTFTHKSSNGTVLETGVWIASELVSFDSYGIAPGALMRLNPALNPAQLGAWRLRIFSGSMPAGGRAVFRIHLLPVSGLSKNATLQVNCAVGKVPPEHEVGGIKLAFEGGGVEFDEEISGRALFLLARPGASAATKAPAPDADTNPAPAEAEQ
Ga0187849_1000001284	F006229	GGAG	MSKLEGTATLVNISSQKWPPRYRTYFGSLEINSPAPGEHYAVTRIEGCMGVIDLGDKRTIEYAIPARAIAEDIAREINGDSGEGSFHGVFVAEGELPTVAELARARERLEDFQRRLVAAADLEWERSHNPMFITDLERRAARELRFEKPWLYDPKPMAECPACAEKIKPGVAVCRSCGAILDRAKAAQFGLLGEVEKDAPVATATLGSTHERRRAEQSRPGDE
Ga0187849_1000001288	F000739	AGG	MRTVELWLKGIAAAAISGAAGGVLTGFAAVGIDPQHFNLQAGIGDTLRIALAAALINAVIGVAAYLQKSPLPET
Ga0187849_1000001289	F000512	N/A	MIHVVRETHEAPSAVVHRLERAGGLNRFGEPNYRAVWGWSRLAWIGGKFEERDPETGALLREVVELRQEPKYPAVNRWHIERWVPPEVYGSPRTWYAQTLEVTGGRSVPALGPYPSRGDYEHCFTLENPRGEFIQLTPTVAEYVALAIDSARRLPCRKRRQAIEAREQRLDREYDAWAYELMDGGAPAFVTKL
Ga0187849_1000001458	F019380	AGGAGG	MRFRILILLAFVSLASLAVAQQQHCRKVDIDKSSGSCTVPDPKLTPGEMDAKLACVSNQERPRRVTVAEKNQVLANYGYPPDTDKSTGEFDHWFPHWMGGSDGIKNIWFEPHAGKFGSFAKDKVEDLLYRKVCVDKTMTLKEAKAQYLSGWTKLVPKK
Ga0187849_1000001463	F030998	GGAGG	MKHDDKNGKMTASMEEVAYYNMFLTEAMFELLAEKGILTGAEVLERVKKLKKETHPQFKWLQ
Ga0187849_1000001478	F004185	GGAGG	MLKKTYVRDGKNRVIGSLTTGFEGSFETLVRDEHDNVIGRTSQQFGTTRDGRGKLVSLNTADPGLLFNRKK
Ga0187849_1000001495	F000313	N/A	MPKPVERWLLFKYFGGELTLLSKPLKKKEQAERERQKYPERERKTIGIGVVRTKG