Scaffold Ga0187856_1015168

Overview

Basic Information

• Taxon OID: 3300017925
• Scaffold ID: Ga0187856_1015168
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4170
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F010114	Metagenome / Metatranscriptome	308	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_10151682	F010114	GAGG	MIIELNDDDTRLLYTVLLQQAQEHLSYADTSEVAERLCKLATRFERPVRELPNILIA
Ga0187856_10151683	F001596	AGGAG	MSWFHSSTAAVDARNHASPAEIVVCFQDQRNVLGRLAFLITGDQATAEQAVVQACEITLQGNSPFRDWLFEWAKAATIVSAISHGMEAIRICEAAHKDRRCPHVEHLSQGDAEERAPSLDFVLGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHAMTWLHDGHVKPVEENHDASHAAQF
Ga0187856_10151684	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVTDWAEQARCLVTKDVLPKDLIVDLTEVSYIDSVGEQLLKWLASVGAVFVAGSVYAFAICDRLRLSPMQRISERRKRRHGNNEERSSIRHSHPVEAI
Ga0187856_10151686	F004823	AGGAG	MYVTKAVNGVPAIQRDGQSVLRVCGQDWEFADWLCALLNELGQKSELLLNEQDWEWLRAIDSPFRRTAQHA