NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187856_1010966

Scaffold Ga0187856_1010966


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1010966 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5197
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F003859Metagenome464Y
F007120Metagenome357Y
F015428Metagenome254Y
F076760Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0187856_10109661F076760AGGAGMSLVTRYRLFWAALMAALLGLAFWKNSRSYPRKSRLWRLGKAIIDTGLVALMVIYGPALLLMYVVIWLTSPFKNKIIQGTTAFASILVVTHLAGVV
Ga0187856_10109662F007120AGGAGGMKTLIIALAAACAVVGYYFGLRYFTGRDLGFTPARKYVRNLAENLLHTEVTAAREAGIARNTPTEQSASR
Ga0187856_10109663F002761AGGAGGMTFTPSATSSFSAGAVFWGMVWATLGKLNELVHFVGFKKANPRQAVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNALMVMFIVPIWCRLSNLELR
Ga0187856_10109664F015428AGGAGGMTGILELFALVELGSGIGFLATWRNRLLASKVNYFHPPHDKKSPFDKLVRAQTGPVITRHDQLCVKVADGLTVLVRRLVMLDAFRQLMRAVFMPNSPLRRSLRTEKKVIYG
Ga0187856_10109665F003859AGGAGMDEPNAEKHTSLEGTSTPGRSWPGVSLYKSLKLGWHWRRLRWAVVAASEAAQGHEANGLSPGSREFKTLFNEVASKVQEYSTESGDPLETLMARLPALCALERLANPASSMPQNKAGLTLGILIAAFLGPIGIGALIGLGVGMAHWISHLFG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.