Scaffold Ga0187856_1000788

Overview

Basic Information

• Taxon OID: 3300017925
• Scaffold ID: Ga0187856_1000788
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27207
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006230	Metagenome / Metatranscriptome	378	Y
F016565	Metagenome / Metatranscriptome	246	Y
F027602	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_100078821	F006230	GAGG	MPIPTARFCALQLACCVLFALMLAGAQANPNLQNENRENKTPSPAKPGADYSGMYSFLRDGEFVQVTVEDQGRVTGFVSRYGDSENDRGVFLDHFFKSGKLDGNQLAFTTETVHGVSFEFRGTVERGEGKSRCDEAYYVLKGTLVENTTDEAKKTSSRSREVALKSFPQDLAPPQDQKK
Ga0187856_100078826	F016565	GAGG	MTTPASAIKDEVRLLIDVQIETFGQPAPLTSSQLHEFHHRCERIGTLCQELDRIGTKSVIERRLERAA
Ga0187856_10007883	F027602	GGAG	MAKHSLRILKRVSNVPSLGICESCNMQFSADPRQLGQAGVQQQFNAHKCDTGKTAAPIAGETAKVAGK