Scaffold Ga0187856_1000498

Overview

Basic Information

• Taxon OID: 3300017925
• Scaffold ID: Ga0187856_1000498
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35631
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (74.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047433	Metagenome / Metatranscriptome	149	Y
F047438	Metagenome	149	Y
F053020	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_10004983	F053020	N/A	MGFGGSFIFGAISAVSVLLITVGVFYVLIKLGSLLDALKEKTETGSTKK
Ga0187856_100049834	F047438	AGGAGG	MNGESKRSFAVALASFAIGAVVAGVLGNSATRQRIARAGKKLAKRARTADLA
Ga0187856_10004988	F047433	GAG	MLLICALVVFAANATLIIVQSEPQISLRGSSGHNVSFAGAGFLPTDTTCNVSSPSSSEVILSSACVVQVGTGEPYGGFTIGNVLPGSYVIQVTGNYGDFAQAIVQVGGGSSQSGRSHVAGLQAGSRVSVEATGLLPTDTTCQLSSPSSPNVILTGTAACVIQVGTGVAYGGFIIGNVLPGPYVIQVTGNQGDSAQTILTVG