Scaffold Ga0187856_1000187

Overview

Basic Information

• Taxon OID: 3300017925
• Scaffold ID: Ga0187856_1000187
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59580
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (58.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065956	Metagenome / Metatranscriptome	127	Y
F094787	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_100018734	F094787	AGGAGG	MKKLLGMLLTGLTFVTLASMAQAQFGPPGGRYRPESVSALIDRVHVDLNRGYGVWHLRHGDRDRLTRAERQLRDFARHWRDGRFDKGNLDGAIGAIQRVLDDNHLRGGERDALWNDLGELRRMREAYERHEIGYR
Ga0187856_100018754	F065956	N/A	VNPIINQWGPVAVIVGGYLLGVFFQNRRIDDLRDSMNRRFDDLRETMNKRFDDLHDLLRSEVKRIEDRLERLEHPVVRQS