Scaffold Ga0187856_1000168

Overview

Basic Information

• Taxon OID: 3300017925
• Scaffold ID: Ga0187856_1000168
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62758
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (84.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F002929	Metagenome / Metatranscriptome	520	Y
F003851	Metagenome / Metatranscriptome	465	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_100016812	F003851	GGA	MNRAKRAAATCRTIDEEAKRVLRALEEAMHGPFNTNDPIMEQLRQCPEAFKVGEILGKAFDSLKYVQEGAELGDRYLPPGGAVLPPLV
Ga0187856_100016843	F000208	GAGG	MRIRVTTRVDLFEERKQQHIERGYRIEDERPIPVNGLCSFIAVSEIPDSDPVGELVAQALNRHNGSYGDF
Ga0187856_100016844	F002560	AGGAGG	MIEHNPPPATESTRPPVIPLPVALYVSDELIFELYDGGKPCRRFSIRWERLVPTKNSEPEAASPSSQAGLLPQQD
Ga0187856_10001687	F002929	AGGTGG	MSQNFRPVKEIWNMHSSCFVEPGELIALLHDLAGRVGTASDEHEYGDNEAVWLEDGKKVLDYIEADERFNAASFKDSMEEQGVAISNNDLSTLIDNMRSLVKQWRSSIGEHGELVFYIDA