NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187856_1000168

Scaffold Ga0187856_1000168


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1000168 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62758
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (84.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000208Metagenome / Metatranscriptome1593Y
F002560Metagenome / Metatranscriptome548Y
F002929Metagenome / Metatranscriptome520Y
F003851Metagenome / Metatranscriptome465Y

Sequences

Protein IDFamilyRBSSequence
Ga0187856_100016812F003851GGAMNRAKRAAATCRTIDEEAKRVLRALEEAMHGPFNTNDPIMEQLRQCPEAFKVGEILGKAFDSLKYVQEGAELGDRYLPPGGAVLPPLV
Ga0187856_100016843F000208GAGGMRIRVTTRVDLFEERKQQHIERGYRIEDERPIPVNGLCSFIAVSEIPDSDPVGELVAQALNRHNGSYGDF
Ga0187856_100016844F002560AGGAGGMIEHNPPPATESTRPPVIPLPVALYVSDELIFELYDGGKPCRRFSIRWERLVPTKNSEPEAASPSSQAGLLPQQD
Ga0187856_10001687F002929AGGTGGMSQNFRPVKEIWNMHSSCFVEPGELIALLHDLAGRVGTASDEHEYGDNEAVWLEDGKKVLDYIEADERFNAASFKDSMEEQGVAISNNDLSTLIDNMRSLVKQWRSSIGEHGELVFYIDA

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