Basic Information | |
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Taxon OID | 3300017925 Open in IMG/M |
Scaffold ID | Ga0187856_1000168 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 62758 |
Total Scaffold Genes | 73 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 62 (84.93%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000208 | Metagenome / Metatranscriptome | 1593 | Y |
F002560 | Metagenome / Metatranscriptome | 548 | Y |
F002929 | Metagenome / Metatranscriptome | 520 | Y |
F003851 | Metagenome / Metatranscriptome | 465 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187856_100016812 | F003851 | GGA | MNRAKRAAATCRTIDEEAKRVLRALEEAMHGPFNTNDPIMEQLRQCPEAFKVGEILGKAFDSLKYVQEGAELGDRYLPPGGAVLPPLV |
Ga0187856_100016843 | F000208 | GAGG | MRIRVTTRVDLFEERKQQHIERGYRIEDERPIPVNGLCSFIAVSEIPDSDPVGELVAQALNRHNGSYGDF |
Ga0187856_100016844 | F002560 | AGGAGG | MIEHNPPPATESTRPPVIPLPVALYVSDELIFELYDGGKPCRRFSIRWERLVPTKNSEPEAASPSSQAGLLPQQD |
Ga0187856_10001687 | F002929 | AGGTGG | MSQNFRPVKEIWNMHSSCFVEPGELIALLHDLAGRVGTASDEHEYGDNEAVWLEDGKKVLDYIEADERFNAASFKDSMEEQGVAISNNDLSTLIDNMRSLVKQWRSSIGEHGELVFYIDA |
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