Scaffold Ga0187856_1000155

Overview

Basic Information

• Taxon OID: 3300017925
• Scaffold ID: Ga0187856_1000155
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65772
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (77.97%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017431	Metagenome	240	Y
F019267	Metagenome / Metatranscriptome	230	Y
F022798	Metagenome	212	Y
F023263	Metagenome	210	Y
F040975	Metagenome	160	Y
F041547	Metagenome	159	Y
F041548	Metagenome	159	Y
F048047	Metagenome	148	Y
F048732	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_100015512	F040975	N/A	MISGNQTWQSGLNASQKQPLYILQIPQFGIVLASFTQSQVQSLTQTGYGVMTWGIGGWGT
Ga0187856_100015515	F048047	GGAGG	MSGNGLAKASDFRGAVERSNVERVILPASGLSVLLCRPPVFAALAMGRAGTQLQTKITDAKPEEIKTEDIEAFTQWLSETLTRLFVQPRFAAAPEADQIGLADILIEDLKFIFSWLRGEVFSAGNRAQGTGDRDENSVTCNLSPVTSTEDLGRFPGRQGAASVLGGSGEAQPLPAEPTPGAHGDARLPAGLQRG
Ga0187856_100015518	F022798	GAGG	MSYTTITQVAGMFPTFTRNGPKGPSDSLIQNYIDDVAGELDAILQRRFQEAYSSLGFTAWQAAFSMDQLNLLEKVNRYGACAQLAEVLETSGIAAAARVAKSFEDEFREMCNKLNARGPDGKPLNQGGDYDYLFDPLAKVETPRSQLGGVAGGDQYPSETSSEDSTNVFKKWDRSEF
Ga0187856_100015519	F019267	GGAGG	MAASATYTTLFTFRLDRRQLVRRIRVDITGLASGANTIPHGIVAPNNQAAGQTPKEEIVLLTSNVAVHRTQAADSTNLYYTVDSGSGTTISVYVTV
Ga0187856_100015522	F023263	AGGAGG	MLGNQGLTAAKFDTNIRALRGTVMSLPVTNPSTESDFYVGLPSGFNTVPTGVLSQDVVEPGYPLTSELWLDPNTNNPITGSVPPSPFVSQGRAWGLILNAAEAEVIAADTTIQAEDDVVIADAYGRVTSIRNVTTGSTAYVVGKAKYPPTAVNQKIRIQVSLRQTKV
Ga0187856_100015531	F017431	AGAAGG	MSKVKTKSEQEFDRTEILRYLNECGLQPVTPKTILIYLDDCLRPVSLPGVEFHLRYMRDRGWVELGIEKQLGKPEVIRWTRITANGVDEYDRRCVALGEAR
Ga0187856_100015532	F041547	GAG	MISANEIQALLLGSGGFIGTCMAGVGAYRLFSAATRGVLRVPASLEKGADCMERAVVAVETQNVVSDQVMELKGLLMATREEIQKISNERELIGRELRLMSRKIEALSCYAQEE
Ga0187856_100015533	F041548	GGAG	MDVQSIQTQALITFVMPLLIQLAKRSQSAGFAWINQNKPKICMLTSGVAALLTSMGIEFVHAPHSLTVSWPDTATLVRGLVTFVVSAVLQFAAQHALYDGFWRHIVPSGSNQAAPVKL
Ga0187856_100015554	F048732	AGGAGG	MNFPVGAEDVKVVQGRSAGLQVMCTCGCINFNYLDPQDTLWRCRNCRKVLSNDFPRLLESAVALQKQVAAAQAPPAPPASSTA