Scaffold Ga0187856_1000069

Overview

Basic Information

• Taxon OID: 3300017925
• Scaffold ID: Ga0187856_1000069
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97258
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (74.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007903	Metagenome / Metatranscriptome	342	Y
F030640	Metagenome / Metatranscriptome	184	Y
F034794	Metagenome / Metatranscriptome	173	Y
F038947	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_100006917	F038947	AGAAG	MSSIKATTYILPLILLTLMTLTPVHASTEPSIPINGRYSILTIKIYIPAFPKWAHDVVLNATIAWNRAQLWNLQNNPTATLYNFVETDDGTATSLVSFSMPAAYASIAVGWTTYKFAPGSRTSIISTQTYLTPTVFNEAQASNATARQYAFWLALHELGRILGLGSILDGKDIMEPRYTPARVTQIPNLSTLDLYALHVLAQGSAPNFVTLPDGVQDQFTPVTVFLQSSPST
Ga0187856_100006956	F034794	GAGG	LGDLKKVGKDIAEILGKRLKTEVQVKGKMLLIPDAVNGRSCGVKDVKLHVKHALHQLGLSEQYRVLTEHHLVRIVKIEEKARHAEREGTAPPPSQSLPYFFPG
Ga0187856_100006960	F030640	AGG	MSEPAAVLEWKPTEGRNYVDILDSLTARIKGMQIDHLGSGLYIDRRTMKKYDYEEDTKGKRHYFEVPLQQHI
Ga0187856_100006962	F007903	GAG	VKRLNSGAVSGDLDRLIKEYLETKLGATLDFFAIEGQISPDANGDMGVTGNYRKRAGDKNVFFTVTVNLASRKIQNLQQY