Scaffold Ga0181552_10002745

Overview

Basic Information

• Taxon OID: 3300017824
• Scaffold ID: Ga0181552_10002745
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12758
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048236	Metagenome / Metatranscriptome	148	Y
F051566	Metagenome / Metatranscriptome	144	Y
F097478	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_1000274510	F097478	AGAAGG	MLHKISQMCDKVNVMYTKSMNLRRLKYDIPKENRTKEEEYHINELVQDIQALAMDIANDRQPYDKK
Ga0181552_1000274515	F051566	N/A	MVKIYESPDGGKTVFERDTDSGERICIEKPVFPEWHITEYEFHEIQELAEDGNKTLQNLLKEVKLVYNLSKEEE
Ga0181552_1000274520	F048236	GAGG	MSNSVSTTDQNIEECMMYLSGEGNYIFGEEVSIDQYDFAIVKSLGKQLGSGNAFTEKQSHIGLRIVKKYSSLLARQGFEVESILKEPKFKWPFRTIDKTKSLFVDGESIVIKSPFIADIVNKVKKRKSPSYYRGMYHSESKTWSFDYNEPNVEFLVNLVKGMNFSIDQKIQDDYKAIIEVKKNALQYYPMLVKNNDKYVFNNTVIEHSDPRRAVMTARLQGCTVFDDSVVDSMKPKQPMDKVLLGDSQKWYINSNVYSFLDIFSLLNTVDKCIIMCSSNNTQQLQTVINALFDNGYSGDDICVMFRFSKSKDFFEGNKFIKKMQVNSFNPNKKIFVINEKIPKPLLTNNIDPQLVMAMLPTMPSHYKTQAWIENKPNVVFYASSKPSGVENCADM