Scaffold Ga0181552

Basic Information
Taxon OID	3300017824 Open in IMG/M
Scaffold ID	Ga0181552_10001006 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21507
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (3.85%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

21507

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (3.85%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022610	Metagenome / Metatranscriptome	213	Y
F041654	Metagenome / Metatranscriptome	159	N
F048852	Metagenome / Metatranscriptome	147	Y
F069860	Metagenome	123	N
F079817	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_1000100615	F069860	N/A	VQLTKIDYICYMKNLLYLLTLTIFTTGCYQYSEPSYPSLDGTYILRSITVNSTDILGSELTDETHDDPMTVVYPNPIGPLDTMKVGKTRISISGNRLYVGYYLENGGDHWRENYDINITQDFITGRWINMNVTYAPEGIDWQTYRHYLIIEDGLEYMVLECPKQYEDGVYGNEYSYSLTFYREGA
Ga0181552_1000100622	F041654	N/A	MRGDQRIKMSLKKIVKKNLNDTKTVKVTKLTESKIVKGRFGIISESVNLNSKIQTTKFFNKLFVESKNLVDMGISTNTINEDLIMVLKGLMGDKNSQVIDTLKDRLITYLESKLDMDSFEKEVLKQSILELEEDEFPQVFSDKRFLARIITDTFIREFGEKYLNGLTNMTRELLMNRIDNEDFKRELEDKFTIALDSLLDSIESNMDSKLKGIRDSVLS
Ga0181552_1000100625	F048852	N/A	MGTAEVKSLIRHALTAIGTLLVLTGLNTWIPLVDLLTENLDSVVNAIEVLVGLGVAVFGFFRNKERFKLVEETQQ
Ga0181552_100010063	F022610	N/A	MKIKLTETQFNKVIKNLITEQGLYGNTSDVVDYDLPEFLSDTIILQSINDWSDVEKSLKELHKRLIRLEKGLDSGGSHNKAYSTGTDYSAKNKKDRDLEKAADSLERDEKLKSDLEQLRKDLDL
Ga0181552_100010067	F079817	GAG	MTVHEISNYFNQCPNMEKAYKEHKNIGRLIRSNVFKYTSTRHWDNMDLLYKITYIKVSRNDDLLVNIKVSGTMGRSSWRSKENTCVTDYVKINHSTSRRRNDDIRRAVRDDVQKFFRLFGMDTYKIEIGKVKVCKEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181552_10001006

Overview

Ecosystem & Geography

Associated Families

Sequences