NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187818_10050554

Scaffold Ga0187818_10050554


Overview

Basic Information
Taxon OID3300017823 Open in IMG/M
Scaffold IDGa0187818_10050554 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1786
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F005112Metagenome / Metatranscriptome411Y
F007120Metagenome357Y
F020836Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0187818_100505541F002761N/ATAGAVFWSMVWAGLGKLNELARFVGFKRSKPRESALRWINSHKVITLTATEVVNYSVHGISSPLGVTFALGGTLVNAFMVTFIVPIWCRLSNLESH
Ga0187818_100505542F007120AGGAGGMKTLIIVLSAACAVVAGYFGVRHFTSRDLGFTHARKYVQSLAKNLLHTELIAAREAGSTPQATTEQAA
Ga0187818_100505543F005112AGGAGMSLVTRYRLFWAALMAALLGLAFWKNSRSYPRKSRLWRLGKAVIDTGLVILMTLYAPALLLMYVVIWLTSPFRNKIIQVSAAFASILAVSHLAGIVFEAVAVLGVFAVDLLTGQVVARMDKRGRNKLAKAGGPIDLSGRQV
Ga0187818_100505544F020836AGGAGGMIRAWGMTLLVGAGVGLFLGPHQVLAQACKDEVSMVEASKQALVELTETVKKETLQDFQRLNHQKSVVNKLAIHNSMLGGLVSCLDKAAQDTTAPKEQVEAAKAQHDAAAKLQEKLQHARVAIKDAQVSKDAKALIEKLDLTP
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