NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187818_10050049

Scaffold Ga0187818_10050049


Overview

Basic Information
Taxon OID3300017823 Open in IMG/M
Scaffold IDGa0187818_10050049 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1795
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093144Metagenome / Metatranscriptome106Y
F104279Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0187818_100500491F104279N/AIWQVCKVAYARREPMKPLFDAVVLTVKLNIAKAINLYLVGGEIGISLLAARLVTEFSANNLKRRAKKP
Ga0187818_100500492F093144AGGAGMTNKSISITSAMLITLSLPLAQAGVEMPGTVTVADLARETLAKRTLERAQASAAAVADEADQLRRIANPVFSPDSHRDKLTALKGKVNRMGQEISSLRAERESLAPWEQQAIDEILPLLQATAENTESAIEYFNEHRDRLWMETYRDYADRIRQGSEQIAKILRNYLKYDKLRDQEVYVEERIRADLQRFEEQRQREDTR

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