NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187818_10004072

Scaffold Ga0187818_10004072


Overview

Basic Information
Taxon OID3300017823 Open in IMG/M
Scaffold IDGa0187818_10004072 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6203
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002291Metagenome / Metatranscriptome574Y
F026700Metagenome / Metatranscriptome197Y
F052077Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0187818_100040722F026700GGCGGMPWPSPSSAISVKYCPLCDAEYAASHTHCTVCGVDLVAEELRGRPLDERQRNERIVVVWRGGDPLAVSEVITTLREAGVRHHVQPTNDHMVFELGMPRPKYAVRVFASDAAKAKELLADVRESPPFALTETHELEQEQTSVPASAPKHEWNPAAATVEIWSSEDAALADLLEACLHENKIGVRREGTEPAPRRFLVMPADEVQAREIIREVRDATPPA
Ga0187818_100040724F052077AGGAGGVREDVHARAEELIAKERVEGISTAEQEWLGQHLRECARCVGAANATEQALRSLRTLSVPLPRELASRTQFRLRLRAQELQVREPRWRLVWMMCGASWVAGAATAPYVWRGLEWIGHRLGVPDLVWQMGFGVWWALPAIVAGAILLVENAGQSVRRNLDDAA
Ga0187818_100040726F002291GGAGGMSANPSLGASLILLWAGEDPAIHAALLETLNAAGIPCKDMTLGDDEVAPTADPLPIDWKPRFGFEVAVLSSDLTAAQQILETLLAEEPQDLEIPEQPAATVEEPPLTVTTELHPTVEVWAGSDDKIAQFLTAAMQENDIPIHLENPADQTRIYVSAANEARAREIVREVTEGAPPK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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