NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187802_10001849

Scaffold Ga0187802_10001849


Overview

Basic Information
Taxon OID3300017822 Open in IMG/M
Scaffold IDGa0187802_10001849 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5850
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001577Metagenome / Metatranscriptome669Y
F003993Metagenome / Metatranscriptome458Y
F043541Metagenome156Y
F051425Metagenome / Metatranscriptome144Y
F053580Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0187802_1000184910F001577GGAMPRFYFNLASKDAHIPDDFGKELDTLHDAYEHGRKLIDKIAFHVGHDNAEEWKVVILNNEHDAQMIIPFSVSHTFRAQRRTRG
Ga0187802_1000184911F053580GAGGMYEQARTALHERLGNDPQISDIELVNEHYRLEVAIYGVEEDLLLSDMRRFVREGTALSPPSLIISKIKEFVRSVGDKFVRLDVF
Ga0187802_1000184912F051425AGGGGGMTKLIVLVEALALAAGIVIVAAVNPQTGQMMVAASQAANRPHESFMSKVIAFAQAAGTVAMLTVNPQTAKPRLH
Ga0187802_100018494F003993AGCAGGMRRQGVEDIKGKTPLVFDQPPKQPRPKLSKAELHEQAAAAFLAWREGQKAKDK
Ga0187802_100018495F043541GGAGMVQQSPIDEQIREYLLQQERIDKARRQQARIGEPVRRERRKWERQLGYFILAGVAVVVFALNEYFHNKSGQMVLIVLGSGALAFLGALIYVNGFLWVMEKLGYKARHRSFKATMTSTGIVFFALWAAWAYAVFSGRY
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