NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181565_10051136

Scaffold Ga0181565_10051136


Overview

Basic Information
Taxon OID3300017818 Open in IMG/M
Scaffold IDGa0181565_10051136 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2988
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028003Metagenome / Metatranscriptome193Y
F077798Metagenome117N
F081356Metagenome / Metatranscriptome114N
F085559Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0181565_100511362F085559AGGAGMTINLQQQSDECGYALEAFAKVLKNNNIEAVGKPHIELIMEYQNEYKKIEIRNQRIENEMNFNFVQSEKTEAYKEWESSWIDWAKKKNEH
Ga0181565_100511363F028003GGALIGQRKKMNINQASGFDKYIIMCDKGQNKLASDYQSYLKFKEVQNALVKISQTPGKTYIFNGVTHEKGMTCAQADRVLDNIFNCKTNMEMISLIVKVARQIGFHEITLPRKIRWGM
Ga0181565_100511364F081356GAGGMGNVKEGKYKVIQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPKNYLKKI
Ga0181565_100511367F077798N/AMTDISKKFKMIIENEDLFKSNPEVMLRLKYLVDNKKSFKNITKEEIEALFLYLNRHNIAN

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