Scaffold Ga0181565_10036240

Overview

Basic Information

• Taxon OID: 3300017818
• Scaffold ID: Ga0181565_10036240
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3614
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015087	Metagenome / Metatranscriptome	257	N
F015991	Metagenome / Metatranscriptome	250	N
F020683	Metagenome / Metatranscriptome	222	N
F099221	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_100362401	F099221	N/A	MQDLSLSQKMGVAIAIAPTVLMLGPVPLVLASGDFLMRQIIKHKVQDNSVKFKPR
Ga0181565_100362402	F015087	N/A	MYGYSVWLVPLNWRLLTKVYKFRHIPHITISTNHATVPDPDNLGRLYNVVDFKQYGKIGKKYEVDPLHSLGWECDVEDLDIKHTPHLSHLYSFFPYDKVYSVYPTPMRLIAEVCVADTRSPNWEEWKIIKEKIPR
Ga0181565_100362403	F015991	N/A	MAFLPFLRHGDLYDLLDTTSKVLNELPNMEKQFNNKLADRYLYKRTHTTDEGFEIEMHLPGVGKDNIHITLSSDDHEVTVVYGENRSASFDLPSYVDVSDEGYKASYIDGVLRLFFKMRTSDKKRREIKLD
Ga0181565_100362406	F020683	AGGA	MSEWTSDTMETKSIALTTTALIDSGLVSESKADALAIHLSKGAKNWCIKQMKPGDVNENLKELQKFNSKVWTEYLAKRNYIFDVTESGVVKRKTPLVEKQERLLEIKNKMVGETFVPPIKKVSKRLLDQARLKRLLTLVKKDLEEMENEMKGLSMINQKLERYFIRRPSFKPKVFIGQEE