Scaffold Ga0181565_10017023

Overview

Basic Information

• Taxon OID: 3300017818
• Scaffold ID: Ga0181565_10017023
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5424
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F052547	Metagenome / Metatranscriptome	142	N
F080057	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_100170233	F052547	GAG	MPIVTDNLKHAQADKEFNLSFDKGHEIKVQFNCEVLSGCEFKCKGCFVNKVGSNMGSYDRLNKAIDLFNDNGFRVSTINIGPTDLFGNNNIVSLLKDETFRECLSKVTTIQFVTTLEKVDNEVIDLLNSIPKKDGFMYDANIALQLPVDWDKIESKLNLLNKFKDDLNYYMVYNMGNDDEYNSQVLEMAKLAKERFNSLLTLNPSFFRSPKSKLQKHLINKWKQYDFSDDLYPKTIIDQAQGGSLELNYTYCNERFFWTPFIYDIALIGTSEFEVKNESDINSWTEIKTDQFMEQLVYAQETKNCGNCHNQMTCIDKGVLSYMKHHSITSCVFPGVVSS
Ga0181565_100170234	F080057	N/A	MLNDSWEKIVKHGGQGEEFTSVSSMGQYKIQVILELLEGCSYNCPGCFVKRKGNWNPQSIDIFYNLAKELKDNNHIVLDDIVIGPTDFYGAQNLTDIINNEKLVQAISWMPEDNRNVQHNCSIDGSLNEKDIQGKLKLIEESLLGKTVKAWDVQIALDLNKVLDDKDYRKALDERVETFANSNLEFEISMATNIVDNISVERIYEANNYIRNKYSTVIEILPSVVRSFDNGNKHGNKLFEWNDLLNDIAKDVDYFKNNIHFLQGDLSHKAFHYSVIGIHNGNVYMSPFIYENAAIYNDDFKIEINNSIHESILNYKNYVVNEQIENSHNKECITCKYLNICSNRLIPKVMDNIFNNRKECILNKQVIELFDNEYYNANSY
Ga0181565_100170235	F042906	N/A	MPIIKNNLYYELTTETQTKPVSAVKIQLDILDGCHHKCPGCFVHRRGNSSDESQLKSACDFVRQITNKGILVDEMLIGPTDFLASENFYEVMPSLIDLINENSPILAFVSTLIDGDLEKWVKWLDNINLDTEIEIGVAINPHKFLEVDYIQNIKNKLKYIDENIKHEVTFTFVVNINDYDLNYHSLHDFAIKEFKTTIDFIPSVSRSHKSSIILKTLDSFNDYFNKLIKGSTLNNIMVDHSHAGMNYTVLNYKKGEWYISPFMYENMAIYDSIFKINSFDDVVNINESQIQRAKNTECENCPLFFSCYHRKIILLRDYLGVDRCIAPKENMINNIHNYNEAAQVMYDWDGYSVEKDKKGYRKKFLITKDGDKRLKELKNISYVK
Ga0181565_100170236	F042905	N/A	MIVHLNNTNAGYYNYDESKSPINKDFLRTEVNLDILHGCNQMCPGCFIPRKNLTGLDNLTQLYNLLKDGSYYPDEIIVGPTDIFDSQNFYDIIKHPSMKSLYEISAIGYLTTINQPIEMVKEKHKMLWDLYDNIDRIPDIDFKIVLDIDKYLDNELDEWYKKLELFKKGSVQFRVNYSKDVFKRISYNDLCQKVYDDFNAPIVITPSFLTDTNSRGKVNEYLKSFREELINQKIDKKWLNLYTFFHVNFNGFGCQNYSFYNGKLYVNPFLYDAIIQRDDFFISNIDDNLLDKNLNYANKVECSNCEYIMYCAERNVHMYMESRNLETCVALKEYMYADN