Scaffold Ga0181565_10004532

Overview

Basic Information

• Taxon OID: 3300017818
• Scaffold ID: Ga0181565_10004532
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10628
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044515	Metagenome / Metatranscriptome	154	Y
F047972	Metagenome / Metatranscriptome	149	Y
F066270	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_1000453212	F047972	GAG	MRFVEFAPNQMIDRYVVVLKNLIGRASSKKSPAKLNWAGLNKILQSNDASIAADYETFKSMYDSSPALQNLVKNFNQDGIELNVPGAPDADQEPTQGDQSSQDAVDATAASAAPQQLAQQTA
Ga0181565_100045322	F066270	N/A	MKISEVLDIRYSAFEKPGQMHKIGDVYGKKNLKVPHAKYVDRTNRQKKLLKK
Ga0181565_100045327	F044515	GAG	MVFGFLLSLYGLHVDAHNIVYVGVSIMSGVCAVWWFWVMFVIKDMFIRVEKAADKMTEVKEELGGIKALIRKLFSGREDK