Scaffold Ga0181565_10001297

Overview

Basic Information

• Taxon OID: 3300017818
• Scaffold ID: Ga0181565_10001297
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19092
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031778	Metagenome / Metatranscriptome	181	N
F045582	Metagenome / Metatranscriptome	152	N
F060659	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_1000129710	F031778	AGGAGG	VKEDELIDEEPEEELDQGTLVPSNLVEIETPSETWKTEFKNEISSLRINGEDVSKIHRAMEELREMRNSSDRNLRRLIILITLLLCSGLGIGVYSLNYLLRFNADKIDEVIDLNLIAIEKTKQGMIKIPLIALSLLEKHRNQMRWDANRSTWTFLDTFTASRMDFSSDFMFYNPQSIEQLKKDYGLFWNGSSWNWPEGYGPKN
Ga0181565_100012978	F045582	N/A	MNDESKDSSISANSLEVELSQESWKTEFHDEIKTVRLNGEKIAEIRDLMDEMKSIKEKNDRTIKGLSIAIISLIIMGLCFLGFGLNYLMKFKVDKLDQMISEGVERFDMTNKTFIHTDAMVQLSDTWHPLLWDRQLQGWFIRKPNGAKRNFYDNVILPKKAYMDLTQSSLTWKQSKWFAPEGFPIQQIGEN
Ga0181565_100012979	F060659	GGA	MAEGKDIYVAINGRVTKSVYQRMQYLANVLDVSMSTLIANSVAEYIHQVTDDKDGKPSVDMEIARFAYSKKKPQEGNQ