Scaffold Ga0163161_10247633

Overview

Basic Information

• Taxon OID: 3300017792
• Scaffold ID: Ga0163161_10247633
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1388
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006485	Metagenome / Metatranscriptome	372	Y
F012897	Metagenome / Metatranscriptome	276	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163161_102476331	F006485	N/A	MEGEPINVALHREASDVLNQALSEIERLRSEADLHRETSHAMRDAFAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD
Ga0163161_102476332	F012897	AGGAGG	MTALTKAAFLVALPLGAAWYLWHGHRIVAAALMAAAFAFIIGTKIRSDVRRKQDEENLQEQAKSDGRYVAAHIEGLGQPQTPTAAELPAVAHLEEMWAQITRELKR