Scaffold Ga0136617_10363054

Overview

Basic Information

• Taxon OID: 3300017789
• Scaffold ID: Ga0136617_10363054
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1176
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0586
  • Long. (^o): 163.6839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070770	Metagenome	122	N
F104098	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136617_103630541	F104098	AGGAGG	MELMHWYNPLTMEEEKVHVPMSDAQAIEILSGHPDSDRFIEEYRRRRAMQTDIVKALIFTGEMSYREHRRGQPPGR
Ga0136617_103630542	F070770	GGAGG	MAKKRAGGQSAPEAWIGQDVVIGVGASGARVSGELREVSDRGVVLHYGAEHGGRDPGHVFYPWSNVQAIQLPDEEQAADEEQAGGEGAE