NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10581819

Scaffold Ga0169931_10581819


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10581819 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)765
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032548Metagenome / Metatranscriptome179Y
F036564Metagenome / Metatranscriptome169N
F044916Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_105818191F044916N/AMGRKKIEKSRIEKGIEKEEKTFSAMAKKIVDAISDDKFLREFTKQCLERLYKDDPKLFAEHSK
Ga0169931_105818193F036564AGGAGMKLGRVTLNLDYVVDMDNNQMVKQAVECFYEDLMAGYKYNNIMDWVDVVEDKTATEDMIPEFLLEKENE
Ga0169931_105818194F032548N/AKDMNKAIKLLEELVYQADEDCPHDCRTIHFTNALEEASEFIKEYKNRQ

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