Scaffold Ga0169931_10248986

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10248986
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1453
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F002243	Metagenome / Metatranscriptome	578	Y
F013172	Metagenome / Metatranscriptome	273	Y
F032934	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_102489862	F002243	AGGA	MLVGFYPVQTPFGDISEEWCMQILSWKGVDQISKKYLNRVEKAVAIRERLSYDYVVTGDNQNSPQEGNPFYGAC
Ga0169931_102489863	F000744	GGA	MTITEVTMNLNVHEIGVILSALQELNLREENRIAREYGSVPALYNKFYSQWERMDTSETGLRYDVVPSF
Ga0169931_102489865	F013172	AGGAGG	MSYYWATKLNDATNRRLEKLEKEGVEVDTSTHQGRKVIGYNYLDLAFDQSTQS
Ga0169931_102489866	F032934	N/A	MTQHILIKQFAKRWYLHWADNGRTIASFATQFEAYAARKFVIEYNKKGGNL