Basic Information | |
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Taxon OID | 3300017788 Open in IMG/M |
Scaffold ID | Ga0169931_10248986 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1453 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Rwanda: Western Province | |||||||
Coordinates | Lat. (o) | -1.78 | Long. (o) | 29.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000744 | Metagenome / Metatranscriptome | 909 | Y |
F002243 | Metagenome / Metatranscriptome | 578 | Y |
F013172 | Metagenome / Metatranscriptome | 273 | Y |
F032934 | Metagenome / Metatranscriptome | 178 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0169931_102489862 | F002243 | AGGA | MLVGFYPVQTPFGDISEEWCMQILSWKGVDQISKKYLNRVEKAVAIRERLSYDYVVTGDNQNSPQEGNPFYGAC |
Ga0169931_102489863 | F000744 | GGA | MTITEVTMNLNVHEIGVILSALQELNLREENRIAREYGSVPALYNKFYSQWERMDTSETGLRYDVVPSF |
Ga0169931_102489865 | F013172 | AGGAGG | MSYYWATKLNDATNRRLEKLEKEGVEVDTSTHQGRKVIGYNYLDLAFDQSTQS |
Ga0169931_102489866 | F032934 | N/A | MTQHILIKQFAKRWYLHWADNGRTIASFATQFEAYAARKFVIEYNKKGGNL |
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