NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0169931_10119115

Scaffold Ga0169931_10119115


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10119115 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2465
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027756Metagenome / Metatranscriptome193N
F032548Metagenome / Metatranscriptome179Y
F036564Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0169931_101191154F027756N/AMKLEDLVDRKILYLNYPINKYSIQEGKVSEISPAKKCIKINSDWHLVDNIRVIELFGENDRPKLGFGLPKNEKKAK
Ga0169931_101191155F032548N/AMKKKQNKDMNKAIKLLEELVYQADEDCPHDCRTIHFTNALEEATEFIKEYKNRQ
Ga0169931_101191156F036564AGGAGMKLGRVCLDLNYIVDMDNDEMVKHAVESLYEDLMQGVKYGNISDWIDVIEDKNATEDMIPDFLLEKEND

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.