NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10118303

Scaffold Ga0169931_10118303


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10118303 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2476
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001190Metagenome / Metatranscriptome753Y
F020527Metagenome / Metatranscriptome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_101183031F020527N/ALPGRRATGITAAYEELLGRQATSEEQAKATERFQQGYYSTVQDLRDSLVKGPEYQKKFNQSYLDNYYDTMFGKQATDATGEKTGKRTFAFDKNLLPTYAESTKGRAGVQLPTFADQFQGTPAEIEEQLQNVRETRKYLYSAGLTNLQGEIDKETQKLKNEGTKDIAKISAQGDIYKQLVGAFSFS
Ga0169931_101183032F001190N/AMTYTAPAGQSASDDYFDINKFEQLLERLEASKGRQQRQKSTEGRRDIYAQGLASMMSNF
Ga0169931_101183033F001190N/AMSYTAPTGQSASDDYFDINKFEQLLNRLEASKGRQQRQKSTEGRRDIFAQGLATMMSNF

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