NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10041921

Scaffold Ga0169931_10041921


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10041921 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5120
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005387Metagenome / Metatranscriptome402Y
F006260Metagenome / Metatranscriptome377Y
F009604Metagenome / Metatranscriptome315Y
F010081Metagenome / Metatranscriptome308Y
F010397Metagenome / Metatranscriptome304Y
F045085Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_1004192110F045085N/AMNKVIDIIIGTLIGSIFALGLILTLSIFLTVLIPCLFYFTIKEVIKQLTKR
Ga0169931_1004192113F009604N/AMNNCGCGNEIHPERFELGYKVCLPCGDKAALKNKKYGYMHFGHKTAGSIVVTSKKAVDNYIKVSKRMNKGSNMGYASRLSTSF
Ga0169931_1004192116F005387N/AMNKLNRKGFFSTLFGGIAGVVAGSSVKASEPVKENVVTCDKLVFTRSDGATCVMTFRDSDNFEIRVNNSENICINIYSPLNKPSVVKAEFKTENSYNFGPDAPPQNQLTIHSNGNIGLGTAYPSAKLDIRCDS
Ga0169931_100419212F010081N/AMKEQIDGIIKKHCLRMQDANKTKSIPMIVKELDVIVYEMYRELYGLRDIRSDNYYLNSFTVDDKKGHCC
Ga0169931_100419215F006260N/AMETELTIKDKVKNPVIIQHDDLKYDGKTITIPSYWVDSLCEFIKNHNVSNETEADVEDYKLFRNFLWDVQEYKNGGN
Ga0169931_100419218F010397N/AMNTSISEYERTKPVVTMQKINELIQLIEDERVKTEILYKDRVRSLEDISFKLKDVKKSFTKGE

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