Basic Information | |
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Taxon OID | 3300017788 Open in IMG/M |
Scaffold ID | Ga0169931_10041921 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5120 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (12.50%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Rwanda: Western Province | |||||||
Coordinates | Lat. (o) | -1.78 | Long. (o) | 29.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005387 | Metagenome / Metatranscriptome | 402 | Y |
F006260 | Metagenome / Metatranscriptome | 377 | Y |
F009604 | Metagenome / Metatranscriptome | 315 | Y |
F010081 | Metagenome / Metatranscriptome | 308 | Y |
F010397 | Metagenome / Metatranscriptome | 304 | Y |
F045085 | Metagenome / Metatranscriptome | 153 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0169931_1004192110 | F045085 | N/A | MNKVIDIIIGTLIGSIFALGLILTLSIFLTVLIPCLFYFTIKEVIKQLTKR |
Ga0169931_1004192113 | F009604 | N/A | MNNCGCGNEIHPERFELGYKVCLPCGDKAALKNKKYGYMHFGHKTAGSIVVTSKKAVDNYIKVSKRMNKGSNMGYASRLSTSF |
Ga0169931_1004192116 | F005387 | N/A | MNKLNRKGFFSTLFGGIAGVVAGSSVKASEPVKENVVTCDKLVFTRSDGATCVMTFRDSDNFEIRVNNSENICINIYSPLNKPSVVKAEFKTENSYNFGPDAPPQNQLTIHSNGNIGLGTAYPSAKLDIRCDS |
Ga0169931_100419212 | F010081 | N/A | MKEQIDGIIKKHCLRMQDANKTKSIPMIVKELDVIVYEMYRELYGLRDIRSDNYYLNSFTVDDKKGHCC |
Ga0169931_100419215 | F006260 | N/A | METELTIKDKVKNPVIIQHDDLKYDGKTITIPSYWVDSLCEFIKNHNVSNETEADVEDYKLFRNFLWDVQEYKNGGN |
Ga0169931_100419218 | F010397 | N/A | MNTSISEYERTKPVVTMQKINELIQLIEDERVKTEILYKDRVRSLEDISFKLKDVKKSFTKGE |
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