Scaffold Ga0169931

Basic Information
Taxon OID	3300017788 Open in IMG/M
Scaffold ID	Ga0169931_10041921 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0169931_10041921 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5120
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (12.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5120

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (12.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Rwanda: Western Province
Coordinates	Lat. (^o)	-1.78	Long. (^o)	29.2	Alt. (m)	Depth (m)	15
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Rwanda: Western Province

Coordinates

Lat. (^o)

-1.78

Long. (^o)

29.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005387	Metagenome / Metatranscriptome	402	Y
F006260	Metagenome / Metatranscriptome	377	Y
F009604	Metagenome / Metatranscriptome	315	Y
F010081	Metagenome / Metatranscriptome	308	Y
F010397	Metagenome / Metatranscriptome	304	Y
F045085	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1004192110	F045085	N/A	MNKVIDIIIGTLIGSIFALGLILTLSIFLTVLIPCLFYFTIKEVIKQLTKR
Ga0169931_1004192113	F009604	N/A	MNNCGCGNEIHPERFELGYKVCLPCGDKAALKNKKYGYMHFGHKTAGSIVVTSKKAVDNYIKVSKRMNKGSNMGYASRLSTSF
Ga0169931_1004192116	F005387	N/A	MNKLNRKGFFSTLFGGIAGVVAGSSVKASEPVKENVVTCDKLVFTRSDGATCVMTFRDSDNFEIRVNNSENICINIYSPLNKPSVVKAEFKTENSYNFGPDAPPQNQLTIHSNGNIGLGTAYPSAKLDIRCDS
Ga0169931_100419212	F010081	N/A	MKEQIDGIIKKHCLRMQDANKTKSIPMIVKELDVIVYEMYRELYGLRDIRSDNYYLNSFTVDDKKGHCC
Ga0169931_100419215	F006260	N/A	METELTIKDKVKNPVIIQHDDLKYDGKTITIPSYWVDSLCEFIKNHNVSNETEADVEDYKLFRNFLWDVQEYKNGGN
Ga0169931_100419218	F010397	N/A	MNTSISEYERTKPVVTMQKINELIQLIEDERVKTEILYKDRVRSLEDISFKLKDVKKSFTKGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0169931_10041921

Overview

Ecosystem & Geography

Associated Families

Sequences