NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10036495

Scaffold Ga0169931_10036495


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10036495 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5642
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (47.37%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051073Metagenome / Metatranscriptome144Y
F078627Metagenome / Metatranscriptome116Y
F090301Metagenome / Metatranscriptome108Y
F101274Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_1003649510F051073GGAGMTFELVRGSGNRVMSTVHIDKHNANADVWFCERKQEYQWMLVWEDGTSWGTHIHGGSAPTKTQARANVVKTILWIEDHWPHHTYFDGP
Ga0169931_100364952F090301N/AMAFDRNPAFGKDQAFSEGARRVADLLWETTGGDVTAFPKSYLENLRHEYSDGRLSMLELIDRVDLGPEATYDDYCEAVDALMAVDYSQWPHPDSVVEVPLGHLLYEIDPVSDFSEVLDFADEIIAETAALDTPQGEVVEEGAEEMITPTGQPGPDPLSDKMELFFKKVISSVYMDGVTEVTDMQGNPPNEANNYLMAPDGKSFAGIFYDSPPNEKAKKFPFKIMETAPDKWSIKY
Ga0169931_100364954F078627AGAAGGMKHLVRSFQSHRGMRGAHFYDADSCNFLPWQNVIEFVKSLPGNKDPDPFSEKLIESLANYNPDTEFLAVQQNGSAVSVEIYSLTQVNG
Ga0169931_100364957F101274GGAGGMIPPRFMPPGVLQLYEVEGDTKTLLQELPTSSKNRDRINKMRLDLLMVHPTKTYVISENNAFQ

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