Basic Information | |
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Taxon OID | 3300017788 Open in IMG/M |
Scaffold ID | Ga0169931_10025698 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7224 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (16.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium → Chromobacterium violaceum | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Rwanda: Western Province | |||||||
Coordinates | Lat. (o) | -1.78 | Long. (o) | 29.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002455 | Metagenome / Metatranscriptome | 557 | Y |
F016369 | Metagenome | 247 | Y |
F017288 | Metagenome / Metatranscriptome | 241 | Y |
F027823 | Metagenome / Metatranscriptome | 193 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0169931_1002569814 | F027823 | N/A | MKVTAAKDVPCVSQSSIWQGYFEAHFMSGKEIDAKYPILNTKWKYSHHKLRDGYDGYYYAYEKEIGKEIGKGIMIDPWFREFKVNIPINDDDVFYKSKMYHTTVESNAVLLVVIKK |
Ga0169931_1002569815 | F002455 | N/A | MKDEEFDIKDDRRTYYYNILGKMMPDHESMAAYLLDEGILCVTSAIDRYDHRECISLHININDYFVPASDAEVVTYDELPKLYELYKERKYDGVSQFVADKRGIPNIYWKDEGSDFQKRVNKKS |
Ga0169931_100256982 | F017288 | AGGA | MADNKTPYELRWDILKEMISVTQNEWFTKKEIAERNAEKSGKQLEYIGDFPLHDAVQRAETVYNQFICKKIHN |
Ga0169931_100256989 | F016369 | N/A | LVELLLVVAILSTIITVFVINYDSLVGNSKYYESRDNLKTFLINLKYQAAFQQKDFELTFDENYNMYSSFDDVYLLNVVTNDLKILETSSTKIVFFLDGSVQESYIVISNLEGTVTNRFIINVIGNVNYEVNTNQVYERQNQNQIQTQTKEDYTSN |
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