Scaffold Ga0169931_10018330

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10018330
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9126
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074373	Metagenome	119	Y
F074452	Metagenome / Metatranscriptome	119	N
F083781	Metagenome / Metatranscriptome	112	N
F085620	Metagenome / Metatranscriptome	111	Y
F093166	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1001833010	F074452	N/A	MTMTRLGIDPFTQEEIWETQRAQDYWEMSYVDEHNRVRYRISRVLVEEEILDLLYCHGHISADQQAATINQARRTHDNRSN
Ga0169931_1001833012	F083781	GGAGG	MSIRHINIAKFEKEAKDLATKTHGNRPSFTGGSLYVEMRDKDHAELLRADLEQYTNVNWGDGDRNSAYGTVVKMYKLGDQNGRTEFVYDFVPGAGATDPEVYHSKIGPMDWDDIPEEVDTMLTLEAEIARGK
Ga0169931_1001833018	F093166	AGGGGG	MKNTRITQTKQEQILAQHIRDLKRDCQQMEDKDVAYDLGYAMASCNILGRKKLSDLILNKFEHYAY
Ga0169931_1001833023	F085620	GGTGG	MVQELVGSMSTDSPGLLDRLLGGLWDRFEAATEWLKDVVDTQPWTHFLLFLALWFTIVWLKDRNFIFHLSWLPWAWYGLVIIGAPIRLGHRY
Ga0169931_100183306	F074373	GAG	MPRKDIIDFEIGDNEETMQYFTDLAKKHKKQVMIQAEAMKKVDSIEKLDITEVHDIIKNAEYKAKDEEL