Scaffold Ga0169931_10015275

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10015275
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10287
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008607	Metagenome	330	Y
F019308	Metagenome	230	N
F036203	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_100152753	F008607	AGGA	MDAIYTKVEQFMTDSVVFTAKASVDKYNKPTFSGNTTVTGRLIYDTTKSKDVQGVEVVDIGRFITYGPATSITVSHRMVVGADTFIINAVDNISDENGAHHTVIRFGR
Ga0169931_100152754	F019308	GGCGG	MAKSSFKLDLFGDKELVNALKAGKENTPRAIAQAIYEEANIIFAKSQILVPVDTGILRGSGGVSAPQMGNQGYFVDIFYGGPAAPYALYVHEIISNYHKPPTQAKYLEQPVVEAMSTIQENIKGRIIDIIEKGHRG
Ga0169931_100152756	F036203	GGTGG	MAETQRSTNSSDAGNATGSSLKTQRARGVYDAPAVNPKINRDDFLLELDALVGAGRIIDGCSIGLMVSQLDEQLRNKLNEIFMNERVLSSSLADVMRSYGLVVSSSDVLRRHRRRLNGKEGCKCPIPNVVAKPK