Scaffold Ga0169931_10011312

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10011312
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12593
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001806	Metagenome / Metatranscriptome	631	Y
F003687	Metagenome / Metatranscriptome	473	Y
F051883	Metagenome / Metatranscriptome	143	Y
F097236	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1001131211	F097236	GGAG	MADIANINLKDGWVQHPGITGGWHLEYVDPLAGFVISIVTGPRGSGLMGTIAPGFPTTYEVWFPGLSNPSGYLTLDEIRGVITYLREKYRDDTMYID
Ga0169931_1001131214	F003687	N/A	MSPSSVAQLLTQDARLLARRNSPSIDQELEAERQQALELFFKFQDGLLPFKELIPFIAIIQRKVDLNRALLKWEQENI
Ga0169931_1001131215	F051883	N/A	MNYPDLQTLTLVGRIASLTVIKTKEDGRDCLAVTLYHRIATDSIITVKFLNSNGLLTAYTNNNLVIGQELTVTGKLTGIRSFYMKEDALTPLKQPEFQIKCIDYAFGSKPQPKVELTNSVVKPTLEPIAF
Ga0169931_100113128	F001806	N/A	MYAIFNKYTSFLLLMDAEMRQKRVEALEKIKEHALERAKKGADSFEVRDFVTSAKKELAYALPDEEAFRKAVKATQTYKGSKIN