Basic Information | |
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Taxon OID | 3300017788 Open in IMG/M |
Scaffold ID | Ga0169931_10010762 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12993 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Rwanda: Western Province | |||||||
Coordinates | Lat. (o) | -1.78 | Long. (o) | 29.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F034904 | Metagenome / Metatranscriptome | 173 | N |
F042808 | Metagenome / Metatranscriptome | 157 | N |
Protein ID | Family | RBS | Sequence |
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Ga0169931_100107625 | F034904 | GAG | MRKTLAQAKNSTIPQAVGLATCDDRFVQLLNEAQERLSEMGKWWGTYKKLRVCVTAGCITWPREVKTIEAMNVCGYNIPIQNQWYEFQTDERAPRTGCGREGCEQDQLLDRGMVYQYRDFTGASKIRIYPSLTAGGTADAGKRVLLQGLDAGTGQPIRTLDAVTGEYVWGEYVTLPNPAVTAYVQTTNIFKVPGLTGAQKPLTQGSLTIVAYNTTTFVQTQIAIWGPSEQNPEYRRTYLINMPQVCGANGCNGGSLNDCIDHGDGCVPADEACTNTVVEAIVRLEFIPAVVDSDWLFIGNLQAVKHMMKAIQKEDRNQYTEAEREIQLALRALRNELEAYSPNERSVINVQPFGSAKIEYRFGGFI |
Ga0169931_100107628 | F042808 | N/A | VQQAFLQGFFQGCGTYTSDSGDPYLFVSIGGKVFQIDINNGFKVSDLTPLGVTFQVQTRGRVSNVATYVCGVPHGLSPGMVVRLTEPLGAFFPTGFFGDFVVETVPSPTTFTTFSPGIDAGPLLGPAFNGYQLLTNNPQATHVYFQQAENWMIIQDQQAPPYLYNGSTLRRATGEEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPAYGRDSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLDYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFTEFGNTPISRQVVRALAYDTEYYLTAASAVNFDNRMLMTIQPRKVNNRGIVHNGMVVMDFDLVSGMGRKLPPAWEGVWTGVDVFQMATIRVRRTERCFVFGLNQDNIGLYEVTKNGQFDFDGFDDAPIDWIIETRSFTFAEPANKKRLVSAEQWYDQVMGNIESKVYFKANESECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPARSRIALPQPPDKCDAQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDLYGDLSRVACPLLSA |
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