Scaffold Ga0169931_10008067

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10008067
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15456
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (38.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034849	Metagenome / Metatranscriptome	173	Y
F048627	Metagenome / Metatranscriptome	148	Y
F067478	Metagenome / Metatranscriptome	125	Y
F093630	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1000806710	F034849	GGGGG	MTALLLASVFTATPLGPGKVPYFERECDRIRIYDKKTDTNWVLCINGVYQFPKNGKPQDRSLPSHKLPLI
Ga0169931_1000806716	F093630	GGA	MARIRCNACGTEIEVYQANKSKSCGCDNGTLLRLDRNGLPIITANDLSLITAIDGVGKPKEKKLDNSTPSGYTKRIPRKLNFEIR
Ga0169931_1000806730	F048627	N/A	MLKTNFRIVEQLDNGDEVITYFQVQMIDKKFYYVYNDVNHGPFEDVDDAVQAAYEDLIPQPVSE
Ga0169931_1000806751	F067478	GAGG	MTATYRGCKYDTDTAYLQYRKWYSETHAPSHPPNKYRGISYRPCNNWNWEEKQ