Basic Information | |
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Taxon OID | 3300017788 Open in IMG/M |
Scaffold ID | Ga0169931_10008067 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15456 |
Total Scaffold Genes | 55 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (38.18%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Rwanda: Western Province | |||||||
Coordinates | Lat. (o) | -1.78 | Long. (o) | 29.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F034849 | Metagenome / Metatranscriptome | 173 | Y |
F048627 | Metagenome / Metatranscriptome | 148 | Y |
F067478 | Metagenome / Metatranscriptome | 125 | Y |
F093630 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0169931_1000806710 | F034849 | GGGGG | MTALLLASVFTATPLGPGKVPYFERECDRIRIYDKKTDTNWVLCINGVYQFPKNGKPQDRSLPSHKLPLI |
Ga0169931_1000806716 | F093630 | GGA | MARIRCNACGTEIEVYQANKSKSCGCDNGTLLRLDRNGLPIITANDLSLITAIDGVGKPKEKKLDNSTPSGYTKRIPRKLNFEIR |
Ga0169931_1000806730 | F048627 | N/A | MLKTNFRIVEQLDNGDEVITYFQVQMIDKKFYYVYNDVNHGPFEDVDDAVQAAYEDLIPQPVSE |
Ga0169931_1000806751 | F067478 | GAGG | MTATYRGCKYDTDTAYLQYRKWYSETHAPSHPPNKYRGISYRPCNNWNWEEKQ |
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