Scaffold Ga0169931_10005599

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10005599
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19097
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (64.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012967	Metagenome / Metatranscriptome	275	Y
F016938	Metagenome / Metatranscriptome	243	Y
F056351	Metagenome	137	Y
F085214	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1000559912	F016938	N/A	MKKQTETLLSEAMDLVNGADHLLANTQTQHDLSAKNCYDLAEKLERACHLLLVIGDRKMQSDLNKIPMGEGVPF
Ga0169931_1000559915	F012967	GGAG	MTNEYRRSVLAPRTRVPFDPGNNKHMLDFARFVKYNTWKDGCSYYLEDPYSDIPSMIRAKIADYTLSKLVEKV
Ga0169931_1000559930	F085214	GGA	MMNKVYDLIAKFEFWYAVKFIKLDKHYTFFLDLNGASGSFAIKFLGKYDGVIVEFANIKVGDNGLMTFDYDVISNINNCNVKSKRFIRFTGNVMRSMIYNSVQNLEKDLNENRELDFVESDSKRNLHEEGTTIPEERVSDRKPRKKTVRRNKGIHSKV
Ga0169931_1000559932	F056351	AGG	MKLEKIEKKVYALAQNWAGEKHIPSIIRGLKKSFKHNIVTFSSERYDSDYFKDHNVIVNAHYCNRISDIVPEHIYIQLNFPRDSKKAIITEKGAKNLAMKIIRAIHHEYRHKHQQKQRPFLLQKPYAPKPKQNKLKAMYYGNPDELDAHAYETQAEKLDINKLRKAHKIGWKECEAIFMYRMHFRKQDPKVWKKFLKKVYKNGCG