Scaffold Ga0183260_10131462

Overview

Basic Information

• Taxon OID: 3300017787
• Scaffold ID: Ga0183260_10131462
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1794
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0827
  • Long. (^o): 164.1679

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004425	Metagenome	438	Y
F029351	Metagenome	188	Y
F055429	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183260_101314622	F004425	GGA	VRSAQLLPAVRDLYSRLPETYVLEPWEMQHVLFSLGYTDDLADEAEVAAAVEVARGDWPQWRAA
Ga0183260_101314623	F055429	GGAGG	MSLQRLVLDYRTGELVLRVLYRRQDGPNPSTKARTREVTELARSGLRDALEALDGRVDTVGVSGFTQREDVLLATSSSGEARQVKAKSRGA
Ga0183260_101314624	F029351	GAGG	MEVIGIRSDEAVDAELDRLISRRASQDRPDPAEQEELWKASVRRHNARRSEEMRAAWCEYHQLQAERHRSVLEALITEHEAKAMNLRKGTT