Scaffold Ga0183260_10107328

Overview

Basic Information

• Taxon OID: 3300017787
• Scaffold ID: Ga0183260_10107328
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2016
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0827
  • Long. (^o): 164.1679

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001245	Metagenome / Metatranscriptome	737	Y
F006339	Metagenome	375	Y
F020315	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183260_101073282	F001245	AGGA	MSEKALGMLKHMRKQIVRREARYVAVREAAISVGVDPGGSECDSLVEELLRAGHLQHYPSPSLTAHGLYRLTDRAIAAADEGEPPSQWRRMPGG
Ga0183260_101073283	F020315	GGAGG	VDEKSLQLLKVMREQLGETTASRTVDAVAAASSLGMYPGTLDRSLLYLVRAGYLEESEDHAMTTQGLYLITFQGIAAIDNA
Ga0183260_101073284	F006339	AGGAGG	MLENDQTTQDAKRLLAAMSTNHSEARMVSPYGLDRPFSPSWADAEQAGLDRVRRDAAMWWLIDNNLLEREEEAENLRDKGKGLPDYDYVYGSVFRITGRGRELLEELWEERRQQ