Scaffold Ga0181424_10002758

Overview

Basic Information

• Taxon OID: 3300017786
• Scaffold ID: Ga0181424_10002758
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7780
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007114	Metagenome / Metatranscriptome	357	Y
F018086	Metagenome / Metatranscriptome	237	Y
F047678	Metagenome / Metatranscriptome	149	N
F085360	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181424_1000275813	F085360	N/A	MAKIKKKLKPFKNCDNKAQSHCFKKGFVITLESSGANYKVKYQRGHSVQYYMKGKEFNLQEAYQSIWDLYTKIYNYDKQKENEYKNTKRIKN
Ga0181424_1000275819	F047678	N/A	MRTYTEKQLEQISGAIITCFVNLHFLQEADSSGLFRQRIKNNVRKTMSDLIDIENSYFSKIEEVDEKELGDKLVANKLEFIEWLLNKFDFNDFSKLQEVCIAYSFNTKELTETSDRIRKENGAKTIE
Ga0181424_100027582	F007114	GGA	MESTTKINDSAWDKLKKQIEYHLKQDNNLTDIRINYQVKMPERGTRNYLGLSVKINE
Ga0181424_100027587	F018086	N/A	MSANKSYLLGDVELPLATIKSLSQYFEDVLTYNAKRELVAKKDENGKAIKKLKLNFSIFEEGNFGQNVSFTIPQSKEQRDNGDKKKYVANGKIYYASDDLQSFVQKSEKKEKQQATELVTDDLPF