Scaffold Ga0181424_10002089

Overview

Basic Information

• Taxon OID: 3300017786
• Scaffold ID: Ga0181424_10002089
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8956
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000375	Metagenome / Metatranscriptome	1217	Y
F004646	Metagenome / Metatranscriptome	429	Y
F015716	Metagenome / Metatranscriptome	252	Y
F025259	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181424_1000208910	F025259	AGGAGG	MIASKAIKVYASVGQPDGEYVTTVFTPHDAIQARTKLFKRTGVRRVIFKTPKGEELSFSNDRVSKL
Ga0181424_1000208917	F000375	GGAGG	MSKMYELEPMILDCWRVCNDLEIVFKQVGDGEHTEDELMNALIGMQQLYEWKFEQLFNKYEEKLRDKE
Ga0181424_1000208921	F015716	GAG	MNELGQGFFAGMFAMYVLALPLLYHMVEPEDPEENRSGPIKFAFLWPVIALEVIYRIFVGEKDNDGTGPN
Ga0181424_100020893	F004646	GGAGG	MIYAIADVPHEDYDNYDMLNKLFHALSPHGWQNSTGKNDTCPSLEKEELHGNTCRIFVDYINPEMREDPRWRLLSYSCYDAEGMKTFHEEFDDVDKLIGFLTEKVN