Scaffold Ga0181355

Basic Information
Taxon OID	3300017785 Open in IMG/M
Scaffold ID	Ga0181355_1028988 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017785 Open in IMG/M

Scaffold ID

Ga0181355_1028988 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2393
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2393

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	15
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F018136	Metagenome / Metatranscriptome	236	N
F035667	Metagenome	171	N
F044972	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181355_10289882	F018136	N/A	MITDATYTLTLEKALTDAFILALQQEMQGALVVTAAQNFGTMTLPACFVKCTRQQESIINSAIFQFNVEISLVVQADDSDQMAFENLWSQVLCISHDIFGLKTKINAIRPQYAFVFGILRDGAVSFSTTDRHFERSVAITAHASLIAS
Ga0181355_10289883	F044972	N/A	MPATVITSSVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKTATISLDGVINGGVAYELANILTLANDISSYGVSGGAVIVDSVAEKTGAGTFKTITVSATQYPEI
Ga0181355_10289884	F011222	AGGA	MEPNKKFFHTINLKAAVALATLGFKMNKPPITRLVRTDGKESTEFWFEGENDKGEDASKVYRQMTKEGDELEESDSENPICYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK
Ga0181355_10289885	F009267	N/A	MKKNKDNELEKDDEILRVQAMEDGPKIVNGRILRPITALTISWMQRNEVFSGEMDSVWKAAAFTFLHSEPYSAIRGVVNDRAIFINAVDSWIEKNMTHHHETSDMSDEMGKAFDLYNSASPASQPGEGSGSGN
Ga0181355_10289886	F035667	AGG	VKVTGWGFREIMEELPFAAGLQLLHADDYANGRHSAWANNNASVDVDAFAIIEATLAKYGKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181355_1028988

Overview

Ecosystem & Geography

Associated Families

Sequences