Scaffold Ga0181355_1009965

Overview

Basic Information

• Taxon OID: 3300017785
• Scaffold ID: Ga0181355_1009965
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4185
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F019817	Metagenome	227	Y
F021097	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181355_10099651	F001165	N/A	MADNTPRIPDSVDMQRLWGMQVVARMKETSDRLGMGFIGGFISPDGQKFVMTNMDDDDSQALLPDELK
Ga0181355_10099653	F019817	N/A	MTTTVTPPVALTINQRNLYTYFLNHRKKHKNTPCYVPRCSTQVSRLDQYLAALIKLEQYGLIRVDRTSDNYTGWIMLEPKTGL
Ga0181355_10099659	F021097	N/A	MTNNHLTDSVIAIVLGTGVGMILSVFGQKMVNQHYKDTCHEKPGHNLVLTRGFLGDTYFCIDSKYIVNH