Basic Information | |
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Taxon OID | 3300017784 Open in IMG/M |
Scaffold ID | Ga0181348_1065952 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1457 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 110 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F016125 | Metagenome | 249 | N |
F100667 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181348_10659522 | F100667 | AGG | MISIFSDTKKLEFALARLADAAKVDLGLVVKQEAAYVAKAVMQITPPTGDKTKKGAKVVTVTGGTITKTKASGLSTNAKQQGENAIMGDLFGGRNMGKEKSIGLFQRIGNSTEVQPRGGKNETMGVNLGWEGGKKIRIYRKFWQQMASIGTMRAFHHANRNERGRPKQVTRSLIGRWQVQDQMWVSEESANAYLKYVQKKVGLAKAGFAAAAMSCGVRVPSWIRRHMAKAGNAQVHFGPNPFVVARTTGNQIPDLQRVVDGALKIRYKITISKVRAVLANRAVNLGFTRVGGAMQIKAAA |
Ga0181348_10659523 | F016125 | N/A | SMAAVRDFDPTQINSDFSAILEQAGVSFTYQGVSVTGIWAAASNAFADFEDQRREDSKFTVFLLTSSVSATPQVTQTLSRASITYFIERVTLDAEGAGCEISVAKVI |
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