NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181348_1038761

Scaffold Ga0181348_1038761


Overview

Basic Information
Taxon OID3300017784 Open in IMG/M
Scaffold IDGa0181348_1038761 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1981
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)110
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038155Metagenome166Y
F051888Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0181348_10387615F038155AGGAGMASNDRKNGKAYKKKPKVQKKTGKTIDGYSPATLAIRAQKRSK
Ga0181348_10387616F051888N/AMTSFALSSSTQSFSCSHENPATQLDTREEYCAECTLLQEGSSVEHALNFQEINRNEQESEPAQSSDIPDEKGFNHQWTNRDGEFLDGVYDITNRLPSWLYLGKHVFPMFKQDELDAYLALPSWATICSTCHYQINKYMGCLEH

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