Basic Information | |
---|---|
Taxon OID | 3300017784 Open in IMG/M |
Scaffold ID | Ga0181348_1002579 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 8067 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 110 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004695 | Metagenome | 427 | Y |
F098944 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181348_100257911 | F098944 | N/A | NSEEDKQKARDYAKVRRAQKKAMKLATGQIEPKAIETVPVVDEFDMTNFTPRSQKATGGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDADDALNEFMESLRKV |
Ga0181348_10025794 | F004695 | AGGA | MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPLRSPITQYKEVEGTRDQLRVFETLAGEKGLTAKRQNMRKVDVNLEGAMQEAMAPDETEAVQEPTDDEIQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKSQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLVQYSDNYNIQQLAGTCLKGAPFMDAMSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMMIPPEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMDEAVKIIQAQSSKGPSAEQQETQSKVELNKAKTQESATVSALNMKKAEDIDMDNYFEGLAAKRGKLTAVQVD |
⦗Top⦘ |