Scaffold Ga0181346_1011309

Overview

Basic Information

• Taxon OID: 3300017780
• Scaffold ID: Ga0181346_1011309
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3808
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015731	Metagenome / Metatranscriptome	252	Y
F033806	Metagenome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181346_10113093	F015731	N/A	MGVNMSVEIETGVVDFDANTAAWLEQYKSAQIKIKELQEVADVARAHIERALGDNQLGMFLNRPVVRYTFVETRRFDTKRAREILPIQVIEALEIVSTSRRFSLVSEDN
Ga0181346_10113097	F033806	AGG	MNIDQFRKAREPLFSIHNHSDGHIALYLEEQDAVKDMLEDVVGNFDYKMLMELQGICAESVKAEGHFDRLETARENLGDGAPLLCSMTEQEALILAEDLIRAVKFARIGREVQGNYPSLKPVK