Basic Information | |
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Taxon OID | 3300017778 Open in IMG/M |
Scaffold ID | Ga0181349_1030087 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2186 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002099 | Metagenome / Metatranscriptome | 593 | Y |
F002933 | Metagenome / Metatranscriptome | 519 | Y |
F079803 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181349_10300871 | F079803 | N/A | VTHKQIYERLCEVEAKVDQLDKNTQTVVAAFNAASGAFVVLEWLAKAVKPILIIGAFFGAIWLAIENKLHQ |
Ga0181349_10300872 | F002099 | N/A | MKWVVAALLIVSLLVSAAEDKCSVREFYGIAYKIHNPSERHQQMSMWLNNHQNLCSSKDMVVIWNNLSEWGGSADSAELRHLVVRAYKNALEREKK |
Ga0181349_10300873 | F002933 | GGAG | MIPPIHKWYPMVQPEGYPNRTDALEQRAERLQEEYAQALKMHKVKDKIDDLEFELYVKKAERNQLSLEIFTNRKLDVYV |
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