Scaffold Ga0181349_1003632

Overview

Basic Information

• Taxon OID: 3300017778
• Scaffold ID: Ga0181349_1003632
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6542
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F024095	Metagenome / Metatranscriptome	207	Y
F068565	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181349_100363210	F002843	N/A	MIVPVNIVSVQVNANNSLFLTTGIYYDSDGTVVVSEITSQYTLNPGDDLTGQPTEVVNIANALWTPAVVEAYKAANPVVEAVQPNE
Ga0181349_10036324	F024095	GGCGG	MDNTNSLPFDYVVTSTLGAAVGATGSSTLIMQADSRFELMVILGTGGEFAVTENSLQYPNSFTVSIRDQTTGRDLMSAPVPQRLLCGNAYRQLPEKRGIIFEPQSNILFTFTNLTGDANRITLVLKGYKIIL
Ga0181349_10036329	F068565	N/A	MLTERSIFSLCEVLPSTVLQVRLSDQIVDGEVVKASTFRRYCLPPGSDLTGQPEQVVAIAGAVWTPAAIAAYNANLKPAIQ