Scaffold Ga0181357_1022431

Overview

Basic Information

• Taxon OID: 3300017777
• Scaffold ID: Ga0181357_1022431
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2509
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F070109	Metagenome / Metatranscriptome	123	Y
F077297	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181357_10224315	F047677	N/A	MKWLKSVFSNEGDASSKRVASIIALLVCINLSYIGTFTQYKCPEYMYDGLLILAGSGLGLTVIESIFGKKKSNDTTNEGTN
Ga0181357_10224316	F077297	GAG	LAKRNQMTQPTREQISAGVIIIIAVAICIFIQLMYIRIKEDEKALEGYERRADRATHVIDSLEATNVQRMQEIARLNMQIEHNTKRYEANISAIDSLDRNGLKRAMHNLLTSLAGERYPGESND
Ga0181357_10224317	F070109	N/A	VRDTLVSLTTEQVRSLLKLKAERDYLKEQVSLLSKSDKIASSVIKDQAKTIDAYSIANEQKAQQLVKVQQELYKEAARKESWRSAALIGIPISFVGGIIFTILF